STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL48115.1DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family. (1314 aa)    
Predicted Functional Partners:
SCL64989.1
Type VII secretion integral membrane protein EccD.
 
 
 0.972
SCL48108.1
Type VII secretion integral membrane protein EccD.
 
 
 0.971
SCL47286.1
WXG100 family type VII secretion target; Belongs to the WXG100 family.
   
 
 0.943
SCL48122.1
Hypothetical protein.
 
   
 0.924
SCL48111.1
MinD-like ATPase involved in chromosome partitioning or flagellar assembly.
 
     0.901
SCL48117.1
Hypothetical protein.
     
 0.782
SCL57770.1
Type VII secretion protein EccB.
 
 
 0.778
SCL48135.1
Hypothetical protein.
 
     0.774
SCL48139.1
Hypothetical protein.
  
     0.770
SCL47289.1
WXG100 family type VII secretion target; Belongs to the WXG100 family.
   
 
 0.756
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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