STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL48122.1Hypothetical protein. (321 aa)    
Predicted Functional Partners:
SCL62637.1
ATP-dependent DNA helicase, Rep family; Manually curated.
  
 0.983
SCL48108.1
Type VII secretion integral membrane protein EccD.
 
     0.934
SCL48115.1
DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family.
 
   
 0.924
SCL53466.1
ATP-dependent DNA helicase RecQ.
   
 0.923
SCL59159.1
ATP-dependent DNA helicase RecQ.
   
 0.923
SCL63709.1
ATP-dependent DNA helicase, RecQ-like.
   
 0.923
SCL48111.1
MinD-like ATPase involved in chromosome partitioning or flagellar assembly.
 
     0.914
recA
Recombination protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
  
 0.849
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 0.791
SCL48117.1
Hypothetical protein.
       0.782
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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