STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL48148.1Lantibiotic dehydratase, C terminus. (603 aa)    
Predicted Functional Partners:
SCL48150.1
Thiopeptide-type bacteriocin biosynthesis domain-containing protein.
 
  
 0.959
SCL48154.1
Lantibiotic biosynthesis dehydratase C-term.
 
    0.957
SCL48146.1
Hypothetical protein.
      0.674
SCL65743.1
Hypothetical protein.
  
     0.571
SCL48367.1
PrgI family protein.
  
     0.506
SCL48735.1
PrgI family protein.
  
     0.493
SCL50364.1
Predicted arabinose efflux permease, MFS family.
  
     0.488
SCL48863.1
Transcriptional activator domain-containing protein.
  
     0.477
SCL48749.1
Replication-relaxation.
  
     0.470
SCL48378.1
Replication-relaxation.
  
     0.425
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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