STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL48331.1Phage integrase, N-terminal SAM-like domain; Belongs to the 'phage' integrase family. (489 aa)    
Predicted Functional Partners:
SCL62430.1
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
    
 0.655
SCL62742.1
Hypothetical protein.
  
    0.602
SCL55724.1
NitT/TauT family transport system substrate-binding protein.
  
     0.534
SCL63324.1
Hypothetical protein.
  
    0.492
SCL48334.1
Hypothetical protein.
       0.483
SCL50033.1
Predicted amidophosphoribosyltransferases.
   
    0.474
SCL51480.1
Hypothetical protein.
  
     0.473
SCL62755.1
Prephenate dehydrogenase; Manually curated.
  
    0.443
SCL47817.1
Helix-turn-helix.
  
     0.437
SCL50769.1
Caspase domain-containing protein.
  
     0.437
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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