STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL48367.1PrgI family protein. (320 aa)    
Predicted Functional Partners:
SCL48370.1
AAA-like domain-containing protein.
    0.961
SCL48374.1
DNA helicase HerA, contains HAS-barrel and ATPase domains.
 
    0.951
SCL48360.1
Hypothetical protein.
 
     0.950
SCL48364.1
Hypothetical protein.
 
     0.950
SCL48738.1
AAA-like domain-containing protein.
    0.841
SCL48742.1
AAA-like domain-containing protein.
 
    0.792
SCL48354.1
Hypothetical protein.
 
     0.791
SCL48721.1
Hypothetical protein.
 
     0.791
SCL48731.1
Hypothetical protein.
 
     0.791
SCL48729.1
Hypothetical protein.
 
     0.790
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.