STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL48395.1Lsr2 protein. (115 aa)    
Predicted Functional Partners:
SCL48391.1
2-polyprenyl-6-methoxyphenol hydroxylase.
       0.668
SCL61297.1
Hypothetical protein.
  
     0.555
whiA
Hypothetical protein; Involved in cell division and chromosome segregation.
  
   
 0.489
SCL57190.1
Hypothetical protein.
  
     0.476
SCL48399.1
Hypothetical protein.
       0.456
SCL57715.1
Hypothetical protein.
  
     0.452
SCL57240.1
Hypothetical protein.
  
     0.450
SCL64970.1
Hypothetical protein.
  
     0.450
SCL57246.1
Hypothetical protein.
  
     0.442
SCL49962.1
Protein of unknown function.
  
     0.403
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.