STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL48488.1Pilus assembly protein, ATPase of CpaF family. (436 aa)    
Predicted Functional Partners:
SCL48480.1
Type II secretion system (T2SS), protein F.
 
  
 0.936
SCL48484.1
Flp pilus assembly protein TadB.
 
  
 0.916
SCL48490.1
Hypothetical protein.
 
    0.856
SCL48470.1
TadE-like protein.
 
    0.848
SCL48474.1
Flp pilus assembly protein TadG.
 
    0.830
SCL48498.1
Hypothetical protein.
 
     0.815
SCL48495.1
SAF domain-containing protein.
 
    0.785
SCL48466.1
Putative Flp pilus-assembly TadE/G-like.
 
     0.781
SCL48500.1
Hypothetical protein; Manually curated.
 
     0.781
SCL48464.1
LysM domain-containing protein.
 
     0.754
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.