STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL48631.1TIR domain-containing protein. (413 aa)    
Predicted Functional Partners:
SCL65959.1
PH domain-containing protein.
  
     0.593
SCL48587.1
Hypothetical protein.
  
  
  0.563
SCL57927.1
Uncharacterized conserved protein YecE, DUF72 family.
  
     0.560
SCL64292.1
Hypothetical protein.
  
     0.550
SCL47659.1
Protein of unknown function.
  
     0.508
SCL48625.1
ArsR family transcriptional regulator.
       0.500
SCL52886.1
Prenyltransferase and squalene oxidase repeat-containing protein.
  
     0.481
SCL48237.1
Helix-turn-helix domain-containing protein.
  
     0.423
SCL58355.1
Hypothetical protein.
  
     0.420
SCL52877.1
Signal transduction histidine kinase.
  
     0.418
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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