STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL48649.1Acetyltransferase (GNAT) family protein. (200 aa)    
Predicted Functional Partners:
SCL48656.1
Amino acid/polyamine/organocation transporter, APC superfamily (TC 2.A.3).
 
     0.832
SCL48660.1
Golgi phosphoprotein 3 (GPP34).
 
     0.825
SCL48652.1
Acetyltransferase (GNAT) family protein.
 
    
0.820
SCL46605.1
Uncharacterized conserved protein, DUF1778 family.
   
   0.663
aroK
Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
    
  0.564
SCL48639.1
RNA polymerase sigma-70 factor, ECF subfamily.
       0.554
SCL48642.1
Hypothetical protein.
       0.554
SCL48646.1
Membrane protease YdiL, CAAX protease family.
       0.554
SCL55209.1
Helix-turn-helix domain-containing protein.
  
     0.552
SCL60248.1
Transcriptional regulator, contains XRE-family HTH domain.
  
     0.542
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.