STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL48697.1Phage integrase, N-terminal SAM-like domain; Belongs to the 'phage' integrase family. (486 aa)    
Predicted Functional Partners:
SCL62430.1
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
    
 0.655
SCL62742.1
Hypothetical protein.
  
    0.579
SCL48699.1
Helix-turn-helix domain-containing protein.
       0.569
SCL55724.1
NitT/TauT family transport system substrate-binding protein.
  
     0.551
SCL48692.1
Helix-turn-helix domain-containing protein.
       0.507
SCL50033.1
Predicted amidophosphoribosyltransferases.
   
    0.474
SCL63324.1
Hypothetical protein.
  
    0.447
SCL62755.1
Prephenate dehydrogenase; Manually curated.
  
    0.443
whiA
Hypothetical protein; Involved in cell division and chromosome segregation.
   
    0.433
SCL62541.1
Putative SOS response-associated peptidase YedK; Belongs to the SOS response-associated peptidase family.
   
    0.433
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
Server load: low (24%) [HD]