STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL48761.1Lsr2 protein. (111 aa)    
Predicted Functional Partners:
SCL61297.1
Hypothetical protein.
  
     0.506
SCL48758.1
2-polyprenyl-6-methoxyphenol hydroxylase.
       0.486
whiA
Hypothetical protein; Involved in cell division and chromosome segregation.
  
   
 0.483
SCL48766.1
MarR family protein.
       0.458
SCL57190.1
Hypothetical protein.
  
     0.436
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
   
 0.433
SCL49962.1
Protein of unknown function.
  
     0.430
SCL47610.1
Protein of unknown function.
  
     0.420
SCL57246.1
Hypothetical protein.
  
     0.406
SCL51015.1
Cobalamin-independent synthase, Catalytic domain.
  
     0.405
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.