STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL48775.1Peptidase family M23. (358 aa)    
Predicted Functional Partners:
SCL48773.1
Hypothetical protein.
       0.773
SCL48769.1
Diguanylate cyclase (GGDEF) domain-containing protein.
       0.651
SCL61604.1
Membrane carboxypeptidase (penicillin-binding protein).
  
     0.599
SCL48779.1
Hypothetical protein.
       0.563
SCL65105.1
Membrane carboxypeptidase (penicillin-binding protein).
  
     0.550
SCL58840.1
Membrane carboxypeptidase (penicillin-binding protein).
  
     0.542
SCL62116.1
Membrane carboxypeptidase (penicillin-binding protein).
  
     0.527
SCL48766.1
MarR family protein.
  
    0.462
SCL51450.1
Signal peptidase I; Belongs to the peptidase S26 family.
 
    0.458
murC
UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
 
 
   0.416
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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