STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL49463.1Hypothetical protein. (273 aa)    
Predicted Functional Partners:
SCL56370.1
Nucleotidyl transferase AbiEii toxin, Type IV TA system.
  
     0.692
SCL49454.1
L-ascorbate metabolism protein UlaG, beta-lactamase superfamily.
       0.688
SCL49982.1
Hypothetical protein.
  
     0.643
SCL49458.1
Hypothetical protein.
       0.642
SCL65286.1
Peptidase family M23.
  
     0.626
SCL56738.1
HD domain-containing protein.
  
     0.616
SCL52285.1
Hypothetical protein.
  
     0.614
SCL50784.1
S-adenosylmethionine decarboxylase; Catalyzes the decarboxylation of S-adenosylmethionine to S- adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine.
  
     0.563
SCL52418.1
Exodeoxyribonuclease-3.
  
     0.559
SCL47330.1
Helix-turn-helix domain-containing protein.
  
     0.547
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.