STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL49505.1Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (311 aa)    
Predicted Functional Partners:
SCL49503.1
L-lysine exporter family protein LysE/ArgO.
 
   
 0.966
SCL54948.1
Transcriptional regulator GlxA family, contains an amidase domain and an AraC-type DNA-binding HTH domain.
   
    0.796
SCL57541.1
Transcriptional regulator, HxlR family.
   
    0.794
SCL59223.1
Nicotinamide-nucleotide adenylyltransferase, NadR type.
   
    0.788
cobB
NAD-dependent protein deacetylase, SIR2 family; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class II subfamily.
   
    0.779
SCL59052.1
Predicted transcriptional regulator, ArsR family.
   
    0.776
SCL55631.1
DNA-binding transcriptional activator of the SARP family.
   
    0.775
SCL59368.1
Glutamate synthase (NADH) large subunit.
  
  
 0.670
SCL45396.1
Transcriptional attenuator, LytR family.
   
    0.661
SCL45809.1
Transcriptional attenuator, LytR family.
   
    0.661
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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