STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL49859.1Hypothetical protein. (117 aa)    
Predicted Functional Partners:
SCL49856.1
Hypothetical protein.
       0.797
SCL64421.1
Hypothetical protein.
 
     0.797
SCL56103.1
MEDS: MEthanogen/methylotroph, DcmR Sensory domain.
  
     0.573
SCL46622.1
Protein of unknown function.
  
     0.503
SCL56046.1
Amino acid/polyamine/organocation transporter, APC superfamily.
  
     0.503
SCL56050.1
Surfactin synthase thioesterase subunit.
  
     0.485
SCL54493.1
Ribosome association toxin PasT (RatA) of the RatAB toxin-antitoxin module.
  
     0.476
SCL50626.1
Hypothetical protein.
  
     0.465
msrA
Peptide-methionine (S)-S-oxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
       0.438
SCL57924.1
NTP pyrophosphatase, house-cleaning of non-canonical NTPs.
  
     0.421
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.