STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL50131.1Parallel beta-helix repeat (two copies); Manually curated. (566 aa)    
Predicted Functional Partners:
SCL50126.1
Glycosyl hydrolase family 71.
 
     0.759
SCL50119.1
Dolichyl-phosphate-mannose-protein mannosyltransferase.
 
     0.750
SCL54863.1
Hypothetical protein.
  
     0.588
SCL50133.1
Predicted oxidoreductase.
       0.581
SCL50124.1
Phospholipase C.
       0.570
SCL47787.1
Methyltransferase domain-containing protein.
  
     0.516
SCL55379.1
Subtilase family protein.
  
     0.516
SCL55383.1
CHAT domain-containing protein.
  
     0.482
SCL50116.1
GtrA-like protein.
       0.471
SCL65222.1
Hypothetical protein.
  
     0.470
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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