STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL50174.1Hypothetical protein. (491 aa)    
Predicted Functional Partners:
SCL50173.1
Hypothetical protein.
 
     0.973
SCL50241.1
AAA domain-containing protein.
 
     0.891
SCL61794.1
Hypothetical protein.
  
     0.635
SCL60534.1
DMSO/TMAO reductase YedYZ, heme-binding membrane subunit.
  
     0.631
SCL52226.1
Putative zinc-finger.
  
     0.615
SCL50664.1
Protein of unknown function; Manually curated.
  
     0.610
SCL49982.1
Hypothetical protein.
  
     0.605
SCL52882.1
Terpene synthase family, metal binding domain.
  
     0.575
SCL50588.1
Protein of unknown function.
  
     0.570
SCL52877.1
Signal transduction histidine kinase.
  
     0.556
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.