STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL50190.1Part of AAA domain-containing protein. (1406 aa)    
Predicted Functional Partners:
SCL53514.1
Protein of unknown function.
  
    0.751
SCL65804.1
SRSO17 transposase.
  
    0.738
SCL49779.1
Cystathionine beta-synthase.
    
  0.674
SCL65916.1
Helix-turn-helix.
  
     0.672
SCL65252.1
Hypothetical protein.
  
     0.667
SCL60590.1
Hypothetical protein.
  
    0.627
SCL48453.1
Hypothetical protein; Manually curated.
       0.597
SCL59368.1
Glutamate synthase (NADH) large subunit.
  
    0.595
SCL50194.1
Hypothetical protein.
       0.519
SCL62712.1
Superfamily I DNA or RNA helicase.
 
   0.518
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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