STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL50327.1Peptidase propeptide and YPEB domain-containing protein. (189 aa)    
Predicted Functional Partners:
SCL50335.1
Hypothetical protein.
 
     0.840
SCL50329.1
Signal transduction histidine kinase.
 
     0.816
SCL50333.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 
    0.648
SCL65954.1
Phosphotransferase enzyme family protein.
  
     0.578
SCL58793.1
Membrane dipeptidase.
  
     0.554
SCL58819.1
Membrane dipeptidase.
  
     0.553
SCL48075.1
O-Glycosyl hydrolase.
    
   0.547
SCL60475.1
Transcriptional regulator, TetR family.
  
     0.534
SCL58067.1
Ketopantoate reductase.
  
     0.512
SCL58806.1
Xaa-Pro aminopeptidase.
  
     0.461
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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