STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL50423.1Transcriptional regulator, RpiR family. (283 aa)    
Predicted Functional Partners:
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
       0.796
SCL50416.1
N-carbamoyl-L-amino-acid hydrolase.
 
     0.708
SCL48984.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
  
 
  0.687
SCL50412.1
Formiminoglutamate deiminase.
       0.640
SCL50015.1
Mannose-6-phosphate isomerase, type 1.
  
 
 0.572
SCL61794.1
Hypothetical protein.
  
     0.493
SCL61059.1
ROK family protein (putative glucokinase).
  
 
 0.491
SCL52687.1
Hypothetical protein.
  
     0.490
SCL50405.1
Histidine ammonia-lyase.
       0.484
zwf
Glucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone.
    
 0.480
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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