STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL50506.1Uncharacterized protein YcnI. (268 aa)    
Predicted Functional Partners:
SCL50504.1
Copper transport protein.
 
  
 0.985
SCL58517.1
Cytochrome c oxidase assembly factor CtaG; Manually curated.
  
  
 0.760
SCL57382.1
Hypothetical protein.
  
  
 0.548
SCL58482.1
Hypothetical protein.
  
  
 0.548
SCL60366.1
Hypothetical protein.
  
  
 0.548
SCL57556.1
Hypothetical protein.
  
  
 0.527
SCL52857.1
Hypothetical protein.
  
  
 0.523
SCL50491.1
Hypothetical protein.
 
     0.507
SCL50501.1
RNA polymerase sigma-70 factor, ECF subfamily.
       0.469
SCL61186.1
Hypothetical protein.
  
     0.449
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
Server load: low (28%) [HD]