STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL50510.1Alpha-1,2-mannosyltransferase. (417 aa)    
Predicted Functional Partners:
SCL46951.1
Signal transduction histidine kinase.
     
 0.628
SCL60043.1
Protein of unknown function.
 
   
 0.588
SCL50029.1
Sporulation and spore germination.
  
     0.563
SCL56170.1
Hypothetical protein.
  
 
   0.556
SCL49458.1
Hypothetical protein.
  
 
   0.545
SCL57770.1
Type VII secretion protein EccB.
  
 
   0.545
SCL51951.1
Hypothetical protein.
  
 
   0.544
SCL46521.1
Hypothetical protein.
  
 
   0.536
SCL58577.1
Fibronectin type III domain-containing protein.
  
 
   0.534
SCL45912.1
Protein of unknown function.
  
  
 
0.531
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.