STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL50536.1Glycosyltransferase family 9 (heptosyltransferase). (365 aa)    
Predicted Functional Partners:
SCL50530.1
3-oxoacyl-[acyl-carrier protein] reductase.
   
   0.861
SCL51198.1
Protein tyrosine/serine phosphatase.
  
   0.851
SCL50534.1
Hypothetical protein.
       0.803
SCL50539.1
Adenine phosphoribosyltransferase.
       0.803
SCL50546.1
Protein of unknown function.
       0.794
SCL50528.1
Probable phosphoglycerate mutase; Non-canonical start codon; manually curated.
       0.779
SCL50542.1
Dephospho-CoA kinase.
  
    0.773
SCL47248.1
NADH dehydrogenase subunit M.
    
   0.770
SCL63534.1
NADH dehydrogenase subunit M.
    
   0.770
nuoN
NADH dehydrogenase subunit N; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 2 family.
    
   0.757
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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