STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL50690.1Protein kinase domain-containing protein. (364 aa)    
Predicted Functional Partners:
SCL50686.1
AAA domain-containing protein.
     0.957
SCL53514.1
Protein of unknown function.
  
    0.721
SCL65804.1
SRSO17 transposase.
  
    0.710
SCL50705.1
Type I restriction enzyme, S subunit.
  
     0.620
SCL60590.1
Hypothetical protein.
   
    0.558
SCL62221.1
RHS repeat-associated core domain-containing protein.
  
    0.551
SCL50714.1
Type I restriction enzyme M protein.
 
    0.540
SCL50694.1
AAA-like domain-containing protein.
 
     0.513
SCL50684.1
Hypothetical protein.
    
  0.509
SCL54361.1
RHS repeat-associated core domain-containing protein.
  
    0.504
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.