STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL50694.1AAA-like domain-containing protein. (1822 aa)    
Predicted Functional Partners:
SCL50705.1
Type I restriction enzyme, S subunit.
 
     0.953
SCL50700.1
Serine/threonine protein kinase.
 
     0.946
SCL50714.1
Type I restriction enzyme M protein.
 
     0.933
SCL50711.1
Predicted ATPase.
 
     0.913
SCL52236.1
Hypothetical protein.
   
   0.867
SCL50699.1
Hypothetical protein.
       0.817
SCL50708.1
Hypothetical protein.
       0.779
SCL50690.1
Protein kinase domain-containing protein.
 
     0.513
SCL64421.1
Hypothetical protein.
  
     0.453
SCL46503.1
Protein of unknown function.
  
     0.447
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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