STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL50720.1Hypothetical protein. (447 aa)    
Predicted Functional Partners:
SCL50724.1
Phosphotransferase enzyme family protein.
 
     0.939
SCL52882.1
Terpene synthase family, metal binding domain.
  
     0.756
SCL52886.1
Prenyltransferase and squalene oxidase repeat-containing protein.
  
     0.724
SCL52877.1
Signal transduction histidine kinase.
  
     0.686
SCL62656.1
Protein of unknown function.
  
     0.638
SCL50726.1
Hypothetical protein.
  
    0.594
SCL59531.1
Hypothetical protein.
  
     0.590
SCL47986.1
Protein of unknown function.
  
     0.583
SCL63074.1
Hypothetical protein.
  
     0.583
SCL60552.1
Protein of unknown function.
  
     0.579
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.