STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL50827.14-hydroxybenzoate polyprenyltransferase. (321 aa)    
Predicted Functional Partners:
atpD
ATP synthase F1 subcomplex beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
   
  0.702
SCL50831.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
     0.571
SCL61219.1
Hypothetical protein.
  
     0.571
SCL55413.1
Hypothetical protein.
  
     0.557
SCL56060.1
Thioesterase domain-containing protein.
     
 0.552
SCL55461.1
Hypothetical protein.
  
     0.542
SCL50471.1
Hypothetical protein.
  
     0.534
SCL47283.1
Type VII secretion protein EccE.
  
    0.530
SCL50818.1
Glycosyl transferase family 2.
 
    0.530
SCL54828.1
Leucine rich repeat variant.
  
     0.528
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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