STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL50848.1Choline dehydrogenase. (536 aa)    
Predicted Functional Partners:
SCL57047.1
Hypothetical protein.
    
 0.986
SCL65393.1
Nucleoside phosphorylase.
  
 
 0.975
SCL57675.1
WD40 repeat.
    
 0.971
SCL59876.1
Menaquinol-cytochrome c reductase cytochrome c1 subunit precursor.
  
 
 0.955
SCL58137.1
Acyl-CoA reductase; Belongs to the aldehyde dehydrogenase family.
  
 
 0.880
SCL63034.1
Phosphatidylserine decarboxylase.
     
 0.856
SCL47558.1
TPR repeat-containing protein.
 
 
  0.840
SCL56060.1
Thioesterase domain-containing protein.
    
 0.837
SCL50845.1
Taurine dioxygenase.
 
    0.829
SCL57285.1
Hypothetical protein.
    
 0.822
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.