STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL51149.1DNA processing protein. (304 aa)    
Predicted Functional Partners:
SCL61331.1
Competence protein ComEC.
 
  
 0.803
SCL51474.1
Magnesium chelatase family protein.
 
 0.759
SCL51138.1
DivIVA domain-containing protein; Manually curated.
       0.714
SCL51141.1
Hypothetical protein.
       0.714
SCL51145.1
Hypothetical protein.
       0.714
SCL50033.1
Predicted amidophosphoribosyltransferases.
  
 
 0.683
recA
Recombination protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
  
 
 0.661
SCL53384.1
PAS fold-containing protein.
  
    0.573
SCL51622.1
Signal transduction histidine kinase.
  
    0.535
SCL46947.1
Serine phosphatase RsbU, regulator of sigma subunit.
  
    0.530
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.