Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SCL47606.1 | glnD | GA0070617_0634 | GA0070617_1770 | Predicted arabinose efflux permease, MFS family. | [protein-PII] uridylyltransferase; Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen metabolism. | 0.540 |
| SCL51402.1 | SCL51404.1 | GA0070617_1768 | GA0070617_1769 | Ammonium transporter. | Nitrogen regulatory protein P-II family; Belongs to the P(II) protein family. | 0.999 |
| SCL51402.1 | SCL51613.1 | GA0070617_1768 | GA0070617_1833 | Ammonium transporter. | L-glutamine synthetase. | 0.676 |
| SCL51402.1 | SCL59368.1 | GA0070617_1768 | GA0070617_4086 | Ammonium transporter. | Glutamate synthase (NADH) large subunit. | 0.960 |
| SCL51402.1 | SCL60029.1 | GA0070617_1768 | GA0070617_4265 | Ammonium transporter. | Glutamine synthetase. | 0.822 |
| SCL51402.1 | SCL60070.1 | GA0070617_1768 | GA0070617_4273 | Ammonium transporter. | Glutamate-ammonia-ligase adenylyltransferase; Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transd [...] | 0.610 |
| SCL51402.1 | ffh | GA0070617_1768 | GA0070617_1771 | Ammonium transporter. | Signal recognition particle subunit FFH/SRP54 (srp54); Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. | 0.582 |
| SCL51402.1 | glnD | GA0070617_1768 | GA0070617_1770 | Ammonium transporter. | [protein-PII] uridylyltransferase; Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen metabolism. | 0.945 |
| SCL51404.1 | SCL51402.1 | GA0070617_1769 | GA0070617_1768 | Nitrogen regulatory protein P-II family; Belongs to the P(II) protein family. | Ammonium transporter. | 0.999 |
| SCL51404.1 | SCL51613.1 | GA0070617_1769 | GA0070617_1833 | Nitrogen regulatory protein P-II family; Belongs to the P(II) protein family. | L-glutamine synthetase. | 0.647 |
| SCL51404.1 | SCL59368.1 | GA0070617_1769 | GA0070617_4086 | Nitrogen regulatory protein P-II family; Belongs to the P(II) protein family. | Glutamate synthase (NADH) large subunit. | 0.919 |
| SCL51404.1 | SCL60029.1 | GA0070617_1769 | GA0070617_4265 | Nitrogen regulatory protein P-II family; Belongs to the P(II) protein family. | Glutamine synthetase. | 0.848 |
| SCL51404.1 | SCL60070.1 | GA0070617_1769 | GA0070617_4273 | Nitrogen regulatory protein P-II family; Belongs to the P(II) protein family. | Glutamate-ammonia-ligase adenylyltransferase; Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transd [...] | 0.751 |
| SCL51404.1 | ffh | GA0070617_1769 | GA0070617_1771 | Nitrogen regulatory protein P-II family; Belongs to the P(II) protein family. | Signal recognition particle subunit FFH/SRP54 (srp54); Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. | 0.541 |
| SCL51404.1 | glnD | GA0070617_1769 | GA0070617_1770 | Nitrogen regulatory protein P-II family; Belongs to the P(II) protein family. | [protein-PII] uridylyltransferase; Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen metabolism. | 0.999 |
| SCL51613.1 | SCL51402.1 | GA0070617_1833 | GA0070617_1768 | L-glutamine synthetase. | Ammonium transporter. | 0.676 |
| SCL51613.1 | SCL51404.1 | GA0070617_1833 | GA0070617_1769 | L-glutamine synthetase. | Nitrogen regulatory protein P-II family; Belongs to the P(II) protein family. | 0.647 |
| SCL51613.1 | SCL59368.1 | GA0070617_1833 | GA0070617_4086 | L-glutamine synthetase. | Glutamate synthase (NADH) large subunit. | 0.975 |
| SCL51613.1 | SCL60029.1 | GA0070617_1833 | GA0070617_4265 | L-glutamine synthetase. | Glutamine synthetase. | 0.881 |
| SCL51613.1 | SCL63235.1 | GA0070617_1833 | GA0070617_5140 | L-glutamine synthetase. | Assimilatory nitrite reductase (NAD(P)H) large subunit precursor; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. | 0.900 |
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