STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL51465.1isopenicillin-N epimerase. (393 aa)    
Predicted Functional Partners:
SCL59028.1
Nitrogen fixation protein NifU.
 
 0.989
SCL46225.1
Cysteine desulfuration protein SufE.
  
 0.914
SCL59038.1
Fe-S cluster assembly ATP-binding protein.
 
  
 0.865
SCL59045.1
Iron-regulated ABC transporter permease protein SufD.
 
 
 0.831
SCL59048.1
Iron-regulated ABC transporter membrane component SufB.
 
 
 0.827
SCL52418.1
Exodeoxyribonuclease-3.
  
 
   0.779
SCL59033.1
Cysteine desulfurase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
  
  
  0.775
xerC
Integrase/recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
       0.730
SCL56262.1
Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family.
  
 
   0.690
SCL45350.1
Transcriptional attenuator, LytR family.
    
  0.688
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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