STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL51514.1Phytoene dehydrogenase-related protein. (531 aa)    
Predicted Functional Partners:
SCL46767.1
Phytoene synthase.
 
 
 0.899
SCL59664.1
Putative membrane protein.
 
  
 0.557
SCL54525.1
Acyl transferase domain-containing protein.
    
 0.505
SCL58046.1
Acyl transferase domain-containing protein.
    
 0.505
SCL57311.1
Lycopene beta-cyclase.
  
 
 0.419
SCL50426.1
Transferase hexapeptide (six repeat-containing protein).
  
     0.414
SCL50137.1
Magnesium chelatase subunit I.
  
 
 0.410
SCL46760.1
Phytoene desaturase.
 
   
 0.409
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.