STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL52114.1DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain. (222 aa)    
Predicted Functional Partners:
SCL45353.1
PAS/PAC sensor signal transduction histidine kinase.
 0.984
SCL45817.1
PAS/PAC sensor signal transduction histidine kinase.
 0.984
SCL52117.1
Signal transduction histidine kinase.
 
 0.980
SCL46951.1
Signal transduction histidine kinase.
  
 0.946
SCL64300.1
Signal transduction histidine kinase.
 
 0.903
SCL63952.1
Two-component system, OmpR family, sensor histidine kinase SenX3.
 0.873
SCL51622.1
Signal transduction histidine kinase.
 
0.839
SCL56731.1
Signal transduction histidine kinase.
 
  0.835
SCL52473.1
His Kinase A (phospho-acceptor) domain-containing protein.
  
   0.815
SCL62385.1
Two-component system, OmpR family, sensor kinase.
 0.813
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.