STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL52155.1Chitin-binding protein. (358 aa)    
Predicted Functional Partners:
SCL52587.1
Pectate lyase.
  
     0.703
SCL52447.1
Poly(3-hydroxybutyrate) depolymerase.
 
     0.655
SCL50146.1
Ricin-type beta-trefoil lectin domain-containing protein.
  
     0.648
SCL57414.1
Ricin-type beta-trefoil lectin domain-like.
  
     0.597
SCL65523.1
Right handed beta helix region.
  
     0.588
SCL56718.1
Pectate lyase.
  
     0.586
SCL58939.1
Cellulose binding domain-containing protein.
  
     0.569
SCL58209.1
Pectate lyase.
  
     0.565
SCL56681.1
Methane oxygenase PmoA.
  
     0.502
SCL61131.1
Hexosaminidase.
     
 0.476
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
Server load: medium (72%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.