STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL52195.1Putative ABC transport system permease protein. (867 aa)    
Predicted Functional Partners:
SCL52199.1
ABC-type lipoprotein export system, ATPase component.
 
  0.979
SCL52201.1
Putative ABC transport system ATP-binding protein.
 
  0.959
SCL52192.1
FtsX-like permease family protein.
 
    
0.862
SCL52464.1
Outer membrane lipoprotein-sorting protein.
   
 
 0.854
SCL55479.1
Sulfotransferase family protein.
  
     0.757
SCL55445.1
O-antigen ligase.
  
     0.745
SCL51548.1
Hypothetical protein.
  
     0.742
SCL51480.1
Hypothetical protein.
 
     0.738
SCL55461.1
Hypothetical protein.
  
     0.738
SCL46931.1
Putative ABC transport system ATP-binding protein.
  
  0.711
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.