STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL52201.1Putative ABC transport system ATP-binding protein. (239 aa)    
Predicted Functional Partners:
SCL52192.1
FtsX-like permease family protein.
 
  0.960
SCL52195.1
Putative ABC transport system permease protein.
 
  0.959
SCL64281.1
Putative ABC transport system permease protein.
 0.894
SCL65517.1
Putative ABC transport system permease protein.
 0.880
SCL65480.1
Putative ABC transport system permease protein.
  0.873
SCL52573.1
Putative ABC transport system permease protein.
 
  0.833
SCL52199.1
ABC-type lipoprotein export system, ATPase component.
 
    
0.798
SCL51644.1
Putative ABC transport system permease protein.
  
  0.718
SCL52464.1
Outer membrane lipoprotein-sorting protein.
   
 
 0.683
SCL64288.1
Putative peptidoglycan binding domain-containing protein.
  
 
 0.607
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.