STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL52206.1Alpha-galactosidase. (549 aa)    
Predicted Functional Partners:
SCL48075.1
O-Glycosyl hydrolase.
 
  
  0.727
SCL59712.1
Chitinase family 18; Belongs to the glycosyl hydrolase 18 family.
  
  
  0.710
SCL49309.1
Alpha-glucosidase.
   
 
 0.702
SCL61854.1
Alpha-glucosidase; Non-canonical start codon; manually curated.
   
 
 0.702
SCL47649.1
Aldose 1-epimerase.
  
 
  0.700
SCL49326.1
Alpha-glucosidase; Belongs to the glycosyl hydrolase 13 family.
   
 
 0.688
SCL52428.1
Beta-galactosidase.
    
 0.686
SCL55171.1
Alpha-galactosidase.
  
  
 
0.674
SCL56204.1
Beta-galactosidase.
    
 0.673
SCL52451.1
Ricin-type beta-trefoil lectin domain-like.
   
 0.670
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.