Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SCL52226.1Putative zinc-finger. (257 aa)    
Predicted Functional Partners:
SCL52230.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
 
 0.982
SCL58034.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
 
 0.918
SCL47267.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
 
 0.906
SCL60753.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
 
 0.885
SCL62742.1
Hypothetical protein.
  
   0.700
SCL52222.1
Secreted repeat of unknown function.
 
     0.671
SCL62562.1
Hypothetical protein.
  
     0.661
SCL60534.1
DMSO/TMAO reductase YedYZ, heme-binding membrane subunit.
  
     0.634
SCL63127.1
Predicted outer membrane protein.
  
     0.624
SCL52233.1
Spermine/spermidine synthase.
 
     0.616
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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