STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL52303.1Chitobiase/beta-hexosaminidase C-terminal domain-containing protein. (812 aa)    
Predicted Functional Partners:
SCL55524.1
Zinc carboxypeptidase.
  
     0.609
SCL54244.1
Trypsin.
   
 0.576
SCL56654.1
Hypothetical protein.
   
 0.576
SCL57686.1
Snapalysin.
   
 0.576
SCL59960.1
Hypothetical protein.
   
 0.576
SCL55131.1
Ribose transport system substrate-binding protein.
  
     0.544
SCL55436.1
DNA-binding transcriptional regulator, PucR family.
  
     0.543
SCL60475.1
Transcriptional regulator, TetR family.
  
     0.513
SCL64439.1
Probable phosphoglycerate mutase.
  
  
  0.490
SCL65437.1
Prenyltransferase and squalene oxidase repeat-containing protein.
  
     0.479
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.