STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL52336.1Fungalysin metallopeptidase (M36). (981 aa)    
Predicted Functional Partners:
SCL46007.1
Peptidase inhibitor I9; Belongs to the peptidase S8 family.
  
 0.834
SCL46316.1
Serine protease, subtilisin family; Belongs to the peptidase S8 family.
  
 0.834
SCL65325.1
Endoglucanase.
    
  0.830
SCL65479.1
Aryl-phospho-beta-D-glucosidase BglC, GH1 family.
    
  0.830
SCL59712.1
Chitinase family 18; Belongs to the glycosyl hydrolase 18 family.
 
 
 0.681
SCL49891.1
Hypothetical protein.
    
   0.638
SCL51480.1
Hypothetical protein.
  
 0.638
SCL52890.1
5'-nucleotidase.
    
 0.637
SCL63306.1
Glucose/arabinose dehydrogenase, beta-propeller fold.
    
 0.631
SCL63309.1
Ig-like domain (group 3).
    
 0.631
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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