STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL52344.1Beta-xylosidase. (699 aa)    
Predicted Functional Partners:
SCL48075.1
O-Glycosyl hydrolase.
 
 0.890
SCL53921.1
Cellulose binding domain-containing protein.
  
 0.858
SCL55157.1
Cellulose binding domain-containing protein; Belongs to the glycosyl hydrolase 43 family.
     0.841
SCL55746.1
Endo-1,4-beta-xylanase (glycosyl hydrolase family 10).
  
  0.772
SCL65405.1
Endo-1,4-beta-xylanase; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
  
  
  0.772
SCL57982.1
Endo-1,4-beta-xylanase (glycosyl hydrolase family 10).
  
  0.770
SCL57720.1
Endo-1,4-beta-xylanase (glycosyl hydrolase family 10).
  
  0.769
SCL55165.1
Poly(3-hydroxybutyrate) depolymerase.
 
     0.766
SCL55161.1
Poly(3-hydroxybutyrate) depolymerase.
 
     0.765
SCL65479.1
Aryl-phospho-beta-D-glucosidase BglC, GH1 family.
 
 0.764
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.