STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL52383.1Two component transcriptional regulator, LuxR family. (209 aa)    
Predicted Functional Partners:
SCL52388.1
GAF domain-containing protein.
 
 0.906
SCL46951.1
Signal transduction histidine kinase.
  
 0.885
SCL58024.1
Signal transduction histidine kinase.
 
  0.855
SCL50831.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
  0.849
SCL59812.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
  0.839
SCL56899.1
Signal transduction histidine kinase.
 
  0.831
SCL47960.1
Signal transduction histidine kinase.
 
  0.829
SCL64011.1
Signal transduction histidine kinase.
 
  0.829
SCL47435.1
Signal transduction histidine kinase.
 
 0.819
SCL46199.1
Signal transduction histidine kinase.
  
  0.811
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.