STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL52475.1Tetratricopeptide repeat-containing protein. (644 aa)    
Predicted Functional Partners:
SCL63283.1
Hypothetical protein.
  
     0.774
SCL49385.1
Hypothetical protein.
  
     0.773
SCL46685.1
Carboxypeptidase regulatory-like domain-containing protein.
  
     0.769
SCL46443.1
Hypothetical protein.
  
     0.767
SCL64850.1
Septum formation.
  
     0.762
SCL49902.1
Hypothetical protein.
  
     0.761
SCL58577.1
Fibronectin type III domain-containing protein.
  
     0.761
SCL61429.1
Glyoxalase-like domain-containing protein.
  
     0.761
SCL45362.1
Hypothetical protein.
  
     0.747
SCL45824.1
Hypothetical protein.
  
     0.747
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.