STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL52544.1Transcriptional regulator, contains XRE-family HTH domain. (405 aa)    
Predicted Functional Partners:
SCL52547.1
Hypothetical protein.
       0.773
SCL52538.1
DNA-binding transcriptional regulator, XRE-family HTH domain.
 
     0.706
SCL59680.1
Hypothetical protein.
  
     0.589
SCL64930.1
Hypothetical protein.
  
     0.582
SCL49756.1
Hypothetical protein.
  
     0.578
SCL56210.1
TIGR03083 family protein.
  
     0.573
SCL50585.1
Replication-relaxation.
  
     0.561
SCL46708.1
Hypothetical protein.
  
     0.560
SCL45929.1
Protein of unknown function.
  
     0.540
SCL50658.1
Replication-relaxation.
  
     0.540
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.