STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL52587.1Pectate lyase. (520 aa)    
Predicted Functional Partners:
SCL56718.1
Pectate lyase.
  
 
0.899
SCL55592.1
Protein of unknown function.
 
  
  0.886
SCL55344.1
Cellulose binding domain-containing protein.
 
  
  0.831
SCL65523.1
Right handed beta helix region.
 
  
0.812
SCL58209.1
Pectate lyase.
  
  
 
0.748
SCL52155.1
Chitin-binding protein.
  
     0.703
SCL49174.1
Chitin-binding protein.
  
     0.699
SCL61926.1
Cellulase/cellobiase CelA1; Belongs to the glycosyl hydrolase family 6.
 
  
 0.689
SCL55533.1
Endoglucanase.
 
  
  0.664
SCL59303.1
Cellulose binding domain-containing protein.
  
  
  0.657
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.