STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL52793.1Cupin domain-containing protein. (184 aa)    
Predicted Functional Partners:
SCL60049.1
Transcriptional regulator, XRE family with cupin sensor; Manually curated.
  
 0.673
SCL52797.1
Antibiotic biosynthesis monooxygenase.
       0.623
SCL55430.1
Acyl transferase domain-containing protein.
 
 
 
 0.622
SCL54699.1
4-carboxymuconolactone decarboxylase.
    
 0.547
SCL50341.1
Mannose-6-phosphate isomerase, cupin superfamily.
  
  0.540
SCL56584.1
Putative monooxygenase.
  
  0.540
SCL52799.1
Bifunctional hydroxylase/dehydrase.
       0.524
SCL58341.1
Phytanoyl-CoA dioxygenase (PhyH).
 
  
 0.522
cobB
NAD-dependent protein deacetylase, SIR2 family; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class II subfamily.
  
    0.487
nadD
Nicotinate-nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).
   
    0.475
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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