STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL52807.1DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain. (251 aa)    
Predicted Functional Partners:
SCL45353.1
PAS/PAC sensor signal transduction histidine kinase.
 0.989
SCL45817.1
PAS/PAC sensor signal transduction histidine kinase.
 0.989
SCL46951.1
Signal transduction histidine kinase.
  
0.946
SCL63952.1
Two-component system, OmpR family, sensor histidine kinase SenX3.
 0.929
SCL52117.1
Signal transduction histidine kinase.
 
 0.890
SCL62385.1
Two-component system, OmpR family, sensor kinase.
 
 0.883
SCL56731.1
Signal transduction histidine kinase.
 
  0.878
SCL64300.1
Signal transduction histidine kinase.
 
 0.864
SCL57651.1
Signal transduction histidine kinase.
  
   0.856
SCL53105.1
Signal transduction histidine kinase.
 
 0.851
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.