STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL52835.1Oxygenase. (548 aa)    
Predicted Functional Partners:
SCL52832.1
Aromatase.
 
     0.816
SCL52813.1
Cyclase.
 
  
  0.765
SCL52827.1
Ketoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
  0.703
SCL56060.1
Thioesterase domain-containing protein.
 
 0.665
SCL52839.1
Bifunctional hydroxylase/dehydrase.
 
    
0.637
SCL52843.1
acetyl-CoA carboxylase carboxyltransferase subunit beta /acetyl-CoA carboxylase carboxyltransferase subunit alpha.
  
    0.603
SCL52846.1
Acyl-CoA carboxylase epsilon subunit.
       0.601
SCL52824.1
Act minimal PKS acyl carrier protein.
       0.588
SCL48758.1
2-polyprenyl-6-methoxyphenol hydroxylase.
  
     0.563
SCL50353.1
2-polyprenyl-6-methoxyphenol hydroxylase.
  
     0.559
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.