STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL52854.1Glycogen debranching enzyme (alpha-1,6-glucosidase). (821 aa)    
Predicted Functional Partners:
SCL62368.1
Glycosyltransferase involved in cell wall bisynthesis.
  
  0.791
SCL57073.1
Glycosyltransferase involved in cell wall bisynthesis.
  
  0.749
SCL53150.1
Phosphoglucomutase.
   
 
 0.657
SCL61588.1
Trehalose 6-phosphatase.
  
 
 0.579
SCL52850.1
Pimeloyl-ACP methyl ester carboxylesterase.
  
    0.536
SCL52172.1
Glycogen recognition site of AMP-activated protein kinase.
  
 
 0.466
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
  
 
 0.466
SCL57125.1
Maltooligosyl trehalose hydrolase.
  
 
 0.466
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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