STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL52981.1Spore coat polysaccharide biosynthesis protein SpsF. (243 aa)    
Predicted Functional Partners:
SCL52976.1
Spore coat polysaccharide biosynthesis protein SpsG, predicted glycosyltransferase.
 
  
 0.969
SCL52994.1
UDP-N-acetylglucosamine 4,6-dehydratase.
 
   
 0.946
SCL52998.1
N-acetylneuraminate synthase.
 
  
 0.945
SCL52987.1
Hypothetical protein.
 
 
   0.923
SCL52990.1
Perosamine synthetase; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.923
SCL60888.1
Sialic acid synthase.
 
  
 0.893
SCL52983.1
Hypothetical protein.
 
     0.863
SCL53009.1
Protein N-acetyltransferase, RimJ/RimL family.
 
 
  0.857
SCL53012.1
Glycosyltransferase involved in cell wall bisynthesis.
  
    0.635
SCL53192.1
UDP-2-acetamido-2,6-beta-L-arabino-hexul-4-ose reductase.
  
    0.543
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.